http://www.datam0nk3y.org/hyphy/ 2012-02-05T19:03:32-08:00 http://www.datam0nk3y.org/hyphy/ http://www.datam0nk3y.org/hyphy/lib/images/favicon.ico text/html 2011-11-28T11:40:38-08:00 jyoung http://www.datam0nk3y.org/hyphy/doku.php?id=namespace:2011:11:30&rev=1322509238&do=diff Journal Club, 4pm: Jennifer presents on BASH, <http://www.aosabook.org/en/bash.html>. text/html 2011-11-04T13:51:24-08:00 joel http://www.datam0nk3y.org/hyphy/doku.php?id=joel_o_wertheim&rev=1320439884&do=diff Joel O. Wertheim Postdoctoral Research Fellow Department of Pathology University of California, San Diego 220 Dickinson Street, Suite A San Diego, CA 92103 Phone: +1 619 543 5069 E-mail: email Joel I aim to understand the evolution and emergence of pathogenic RNA viruses (e.g., HIV, influenza A virus, measles virus, Ebola virus, etc.) using phylogenetics and other computational tools. I also study these viruses to learn more about evolutionary processes in general. In addition, I am in… text/html 2011-10-22T11:51:27-08:00 sergei http://www.datam0nk3y.org/hyphy/doku.php?id=download&rev=1319309487&do=diff Available HyPhy versions * Developmental. Presently, HyPhy is undergoing a major rewrite leading up to version 2.0. For the latest features and maximum speed, download on of the current builds. This is recommended for most users. * Latest v1.0 release. The latest 1.0 release was compiled on May 12th, 2008 and has not been updated since then. You may want to download this version if you need the functionality not yet fully ported to v2.0 (this is rare). text/html 2011-10-10T11:07:10-08:00 weaverst http://www.datam0nk3y.org/hyphy/doku.php?id=namespace:2011:10:13&rev=1318270030&do=diff The Architecture of Open Source Applications PyPi 16:00 - Join Steven in exploring the developmental and open source organizational challenges of python package managing. Resource * <http://www.aosabook.org/en/packaging.html> text/html 2011-10-07T15:54:03-08:00 martin http://www.datam0nk3y.org/hyphy/doku.php?id=veg&rev=1318028043&do=diff UCSD viral evolution group is comprised of members of several departments from the UCSD School of Medicine. The primary areas of our basic research efforts are statistical evolutionary analysis of pathogens and computational biology in translational research. We apply the methods and software tools that we develop to the study of HIV-1, Influenza A virus and other pathogens. text/html 2011-08-24T11:35:58-08:00 joel http://www.datam0nk3y.org/hyphy/doku.php?id=namespace:2011:08:31&rev=1314210958&do=diff Lance - text/html 2011-08-17T14:45:23-08:00 martin http://www.datam0nk3y.org/hyphy/doku.php?id=namespace:2011:08:17&rev=1313617523&do=diff 4:00pm: Martin leads a discussion of [ this paper] in the second floor small conference room.